rs30238504 SNP Detail

Summary

• ID
  rs30238504
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60177662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAGCAAA CTTCAAATCG
  CTGTGGGGCT TGTAGTCCCA CTGCCTTCCG AACACTGCAG ACAGAAGAAC AATGCAAAAA
  CAAGGGAGAG TAAGAGAAGG TGGGCTAGGA GCCAATCCCT CAATCTCCCT CTCCCTTCTT
  CGGTTTCCTT GGAGGCTGAG AAGACAGCTC TGTCGGAAAG ATTTGGCTTG GGTCCTGGCT
  W
  GGTCATGTGA TCTGTGAGTA TTTATCTATC TTGTTCTCAA TAATAGCAAT TAATAATAAA
  CCGCCTGGCT GTGCCCCGGA ACAAAGGATT GGATGTCTAG CGAAACGTGT CCACAGCAGT
  TCCATTTTGT AAGGCTGCTA TCAGATCAAG CAAGATAAAA TGTGCTCAGT ACTTGAAGGA
  GCAACAATCT CTTCAATATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49114642	NES12407758	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A		A	A	A	T		A
ss324360208	CHEV_13_60131209	CHEVERUD	SCREENING_POP	f	SNP									T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30238504					SNP	A	A	A	A	A	A	A	A	T	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49114642	NES12407758	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60177662 () rs orientation: forward

Symbol	Name	Function Class
A530065N20Rik	RIKEN cDNA A530046M15 gene	within coordinates
Rr284562	regulatory region 284562	within coordinates
Tssr120109	transcription start site region 120109	219 bp downstream
Tssr120110	transcription start site region 120110	155 bp downstream
Tssr120111	transcription start site region 120111	139 bp downstream