rs30238510 SNP Detail

Summary

• ID
  rs30238510
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60176665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCTGTCA GCGCCATCTT
  GTAACGGCGA ATGTGGGCGC GGCTCCCAAC ACCTTAGGTA TGAAGGACTA AGTATTTAAT
  AGGAGAACAG CGAATGAACC AACGCATGCT GAGGTAGGGC AGGGACACTG CCTTTCCTCT
  TGGTAAGAAG CAACTTGTGA ATCTTCACAA AAATTCAAAA ATTTAGAACA GGATGGAGTA
  S
  AAAGTCTGAT CTCTTAAAAA TGAAATGATA TTCTAATTCA TGCTGACCTC ATCTCCAGAG
  CACCTCTCTC TCTCTCTCTC TCTCTCTAAC ACATACACAC AGACACACAC TCATATACAC
  AATCAGACAG ACAGACACAG ATATAGACAC AGAGATATAC ATGAACACCC CCCCCCCAAC
  ATACACAGTC ACAACACAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49114648	NES12407778	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G		G	G	G	C		G
ss324360197	CHEV_13_60130212	CHEVERUD	SCREENING_POP	f	SNP									C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30238510					SNP	G	G	G	G	G	G	G	G	C	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49114648	NES12407778	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60176665 () rs orientation: forward

Symbol	Name	Function Class
A530065N20Rik	RIKEN cDNA A530046M15 gene	860 bp upstream
Rr284562	regulatory region 284562	537 bp proximal
Tssr120109	transcription start site region 120109	771 bp upstream
Tssr120110	transcription start site region 120110	822 bp upstream
Tssr120111	transcription start site region 120111	853 bp upstream