rs30239074 SNP Detail

Summary

• ID
  rs30239074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121426265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAA GAAGCATTGC AAAGGCTAGC
  R
  CTATAAGCAA GCTCCTCTCA CAGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46387778	mCV23081265	ABI	CRAMUS_MOUSE	f	SNP	A	A	G				A		G
ss61239945	NES16854025	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A		G	G	G	A		G	A	G		G
ss137068127	ENSMUSSNP109924	ENSEMBL	ENSEMBL_Sanger	f	SNP			G						G
ss323231652	CHEV_9_121506317	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30239074					SNP	A	A	G	G	G	A	A	G	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61239945	NES16854025	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121426265 () rs orientation: forward

Symbol	Name	Function Class
Gm57058	predicted gene, 57058	within coordinates
Lyzl4	lysozyme-like 4	within coordinates
Lyzl4os	lysozyme-like 4, opposite strand	within coordinates
Rr199244	regulatory region 199244	1865 bp distal
Tssr92055	transcription start site region 92055	10 bp downstream