rs30239237 SNP Detail

Summary

• ID
  rs30239237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45316702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGAGCCC TGGATCTCAA
  AGGATAGCCA TTATTTGTCT TCAACTCTCA CTGGATGTTT GACCTTGGGC CTCAGCTTCT
  CCATACCTCA GATAGCTCAT GTCAAGAGAG GAACTAAAGC AAAAGGGAGA CAACAGCTAG
  AAAATGCTTT GTAAGCCCTA AGATCAAGCT GAGCTTCTTC CTGAAAGAGT CATAAGCATA
  Y
  GGTGACAGCC GCAAGAGGGA GTGTTGGGCA TCAGGATAGG ACATTAGTCA GGGATGGTGG
  AGGATTTCAG ACTGAGGTGT GAGTGGCTAA CTGTGGTGGC CTCGGGACCA GGATAAATAA
  AACAAGTCAG GACAGGCTGT CAGGGACAGC AGTGCTATTG AGGCTGATCC TGCTGGGGAC
  CCAAGATTCA CAGGACTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46388083	mCV25163715	ABI	CRAMUS_MOUSE	f	SNP		C	T						T
ss52013346	NES15030271	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	T	T	T	C	C	T	T	C	T
ss136411255	ENSMUSSNP2418051	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30239237					SNP	C	C	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013346	NES15030271	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45316702 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr677905	regulatory region 677905	5 bp proximal
Rr677906	regulatory region 677906	342 bp proximal
Tssr84790	transcription start site region 84790	531 bp upstream
Tssr84791	transcription start site region 84791	662 bp upstream
Tssr84792	transcription start site region 84792	710 bp upstream
Tssr84793	transcription start site region 84793	1715 bp upstream