rs30242075 SNP Detail

Summary

• ID
  rs30242075
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121426329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGACTGGA GATCAAGAAG CATTGCAAAG GCTAGCACTA
  TAAGCAAGCT CCTCTCACAG TCCGTTGAGT CCTGTTTATA CTCCCTCCAA ACATCACGTG
  W
  CCTCCAAGTG TCTCACCCTG TGTCAGCTGA CATCACTCTG CCAATCAGTC GGAGTCCAAG
  AAAGCGGCAA GAAGCTGCCA CCAGAAGTTT ATGGTGTGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46388669	mCV23081450	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A	T
ss137068133	ENSMUSSNP4653866	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
ss323231653	CHEV_9_121506381	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30242075					SNP	A	A	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121426329 () rs orientation: forward

Symbol	Name	Function Class
Gm57058	predicted gene, 57058	within coordinates
Lyzl4	lysozyme-like 4	within coordinates
Lyzl4os	lysozyme-like 4, opposite strand	within coordinates
Rr199244	regulatory region 199244	1929 bp distal
Tssr92055	transcription start site region 92055	48 bp upstream