rs3024208 SNP Detail

Summary

• ID
  rs3024208
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130662149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGG TGCGTTTGGT TAACAGCTAC
  Y
  GGCTTGATCT GTTTGGCCAG GCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16375660	C04.123.860	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	C	C	C	T	T	C	C	T	C	C	C	C	T	C	C	T	T	C	C	T	T	C	C	T	T	T	C		C	C	C	C	C	T	T	T		C	T	T	T	T	T	C	T	T	T
ss37752872	NES09161749	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T		C							T					C		T			C					C		C			C				T									T
ss321319091	CHEV_4_130490753	CHEVERUD	SCREENING_POP	f	SNP																										T																		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs3024208					SNP	T	T	C	C	C	T	T	C	C	T	C	C	C	C	T	C	C	T	T	C	C	T	T	C	C	T	T	T	C	C	C	C	C	C	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37752872	NES09161749	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130662149 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr39332	transcription start site region 39332	370 bp downstream
Tssr39333	transcription start site region 39333	355 bp downstream
Tssr39334	transcription start site region 39334	306 bp downstream
Tssr39335	transcription start site region 39335	288 bp downstream
Tssr39336	transcription start site region 39336	272 bp downstream
Tssr39337	transcription start site region 39337	245 bp downstream
Tssr39338	transcription start site region 39338	212 bp downstream
Tssr39339	transcription start site region 39339	165 bp downstream
Tssr39340	transcription start site region 39340	117 bp downstream
Tssr39341	transcription start site region 39341	99 bp downstream
Tssr39342	transcription start site region 39342	13 bp downstream
Tssr39343	transcription start site region 39343	within coordinates
Tssr39344	transcription start site region 39344	56 bp upstream
Tssr39345	transcription start site region 39345	92 bp upstream
Tssr39346	transcription start site region 39346	108 bp upstream
Tssr39347	transcription start site region 39347	654 bp upstream
Tssr39348	transcription start site region 39348	1165 bp upstream
Tssr39349	transcription start site region 39349	1210 bp upstream
Tssr43605	transcription start site region 43605	265 bp upstream
Tssr43606	transcription start site region 43606	6 bp upstream
Tssr43607	transcription start site region 43607	234 bp downstream
Tssr43608	transcription start site region 43608	1298 bp downstream