rs3024209 SNP Detail

Summary

• ID
  rs3024209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130662242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCGGCTCA GGATACTCAG
  CCTAGCAGCC CGTCTCGTCT CCATCAGCAG TGACACTTGT TCAGAGCGCA GCCATAGGAA
  GTTAGGGTGC GTTTGGTTAA CAGCTACCGG CTTGATCTGT TTGGCCAGGC AGCAGCAGGA
  AGAGAATCTG GCCAAGCAAT AGTTCCTGGT GTCAGTTTAT ACTCAGCTGT CAGACGACAG
  R
  ATGGGTCATG ATTGTGGTGC CCGTTTGCCA CCTCCAGTAC CCCAAAAGTG TACAAACAAA
  ACAATTCCTT CAAATAGCTT GCTTAAATAG CGATTCAGCC AACTGCTGTC ATTAGGAATT
  ATGATAAAAT CTAGTAAGAA ACTGAGGAGA AAAAGAAATA GAAACGGAGC CCCTCCCACC
  ACTCACTGCA GTGCTCACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37752870	NES09161751	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3024209					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37752870	NES09161751	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130662242 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr39332	transcription start site region 39332	463 bp downstream
Tssr39333	transcription start site region 39333	448 bp downstream
Tssr39334	transcription start site region 39334	399 bp downstream
Tssr39335	transcription start site region 39335	381 bp downstream
Tssr39336	transcription start site region 39336	365 bp downstream
Tssr39337	transcription start site region 39337	338 bp downstream
Tssr39338	transcription start site region 39338	305 bp downstream
Tssr39339	transcription start site region 39339	258 bp downstream
Tssr39340	transcription start site region 39340	210 bp downstream
Tssr39341	transcription start site region 39341	192 bp downstream
Tssr39342	transcription start site region 39342	106 bp downstream
Tssr39343	transcription start site region 39343	85 bp downstream
Tssr39344	transcription start site region 39344	24 bp downstream
Tssr39345	transcription start site region 39345	within coordinates
Tssr39346	transcription start site region 39346	15 bp upstream
Tssr39347	transcription start site region 39347	561 bp upstream
Tssr39348	transcription start site region 39348	1072 bp upstream
Tssr39349	transcription start site region 39349	1117 bp upstream
Tssr43605	transcription start site region 43605	358 bp upstream
Tssr43606	transcription start site region 43606	99 bp upstream
Tssr43607	transcription start site region 43607	141 bp downstream
Tssr43608	transcription start site region 43608	1205 bp downstream