rs30245150 SNP Detail

Summary

• ID
  rs30245150
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59911013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAAAAGCC AACCTTTTCC ATTGGCGCAG
  TCCCCTTCAG TTCATCTGAA TGCGTGGCTA GAGGGTTGCT TCTGGGCTCA GACTTCCAGT
  GTGGGTCAAC ACATACCTGG GTATCCGGGT GGATGGCCAC TGTACTCGGT GACAGGCCTA
  Y
  ATCTGGCTGT GTTTCTTAGA ATGCAGTTCA CCCTAGCCTA GTAGTGTTTA GCATGAGAAA
  AAAGTCTGGA TGTACAGATT AGTACCATCA GTCTCATTTT CTTGTAGAGG ATGCTGGGAC
  CTAGTCTGAT CTGAAACATT CCTGAACCAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49116219	NES12417249	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	C	C	T		C
ss324358098	CHEV_13_59864560	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30245150					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49116219	NES12417249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59911013 () rs orientation: forward

Symbol	Name	Function Class
Gm49354	predicted gene, 49354	within coordinates
Isca1	iron-sulfur cluster assembly 1	within coordinates
Rr281504	regulatory region 281504	within coordinates