rs30245153 SNP Detail

Summary

• ID
  rs30245153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59909432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAACAAA TATACCTTTA
  TAAACCTGCA CAACTAATTT CATGGACTTT TTTGGGGTGG TGGTGGTGGT CTTGGTCAAT
  TTATGCACTA GAAAGTCCAA ACAGAGTCAG CGAGCTGACA TGTGTGTCAG CATTTAACAA
  CTTTCAGGAT GGAGCTGTGA GCAGTACAGT CTTGCTGTTC AAGAGTACCC AGAAAACAGC
  Y
  TTAGGCCTAA CAAATGACTA CCCATAGGCC ACAGCGCAAA GCGACTAACA GACCCAATTC
  AACTACCCTG CATATGAGGA TGGATCTTCT GTGGACTTAG TAAGTCCTGC ATCCAGGTCC
  AGAACACTGG GCCTGGCTCA CTTCACCAAC AGCCGGTAAA TGATGTCTGT GGCAGACATG
  AAAACCCAGA TACCTCTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49116222	NES12417306	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30245153					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49116222	NES12417306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59909432 () rs orientation: forward

Symbol	Name	Function Class
Gm49354	predicted gene, 49354	within coordinates
Isca1	iron-sulfur cluster assembly 1	within coordinates
Rr276825	regulatory region 276825	632 bp distal
Rr281504	regulatory region 281504	1168 bp proximal