rs30246374 SNP Detail

Summary

• ID
  rs30246374
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59909373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAATGGGA GTTTTGGAAA
  AGGAGTTGCT AATGCTATAA ATTACACATT TTACACCATC AAGAACAAAT ATACCTTTAT
  AAACCTGCAC AACTAATTTC ATGGACTTTT TTGGGGTGGT GGTGGTGGTC TTGGTCAATT
  TATGCACTAG AAAGTCCAAA CAGAGTCAGC GAGCTGACAT GTGTGTCAGC ATTTAACAAC
  K
  TTCAGGATGG AGCTGTGAGC AGTACAGTCT TGCTGTTCAA GAGTACCCAG AAAACAGCTT
  TAGGCCTAAC AAATGACTAC CCATAGGCCA CAGCGCAAAG CGACTAACAG ACCCAATTCA
  ACTACCCTGC ATATGAGGAT GGATCTTCTG TGGACTTAGT AAGTCCTGCA TCCAGGTCCA
  GAACACTGGG CCTGGCTCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49116223	NES12417305	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30246374					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49116223	NES12417305	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59909373 () rs orientation: forward

Symbol	Name	Function Class
Gm49354	predicted gene, 49354	within coordinates
Isca1	iron-sulfur cluster assembly 1	within coordinates
Rr276825	regulatory region 276825	573 bp distal
Rr281504	regulatory region 281504	1227 bp proximal