rs30246923 SNP Detail

Summary

• ID
  rs30246923
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52576755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAGATGA GCTAACGTAA
  GAATAGGCAA ACAAGGAGAA CAGAGCAGTG GGGCTGTCAA GGAGCCCTTT AGCTTCTGTT
  GGAATGATTC CATCTGGAGC TCTGAATCTG AGAGTAACTC CCTTGTTCTT TATGGCAATC
  GAGGCAGGGT AACTGGTGAT GAGAACATCT CAGCCAATGT AACACTTTCT TAGGTGGGTT
  K
  TATTTCTTTT TATACCAAAT CTACTGTTCT CATCATGTAG GGAGCTTCAG ATCCCTAGAA
  AGGCATCCTC TGATTAGGAA TGACAAGAAT AATGGTAAGC TGTGCTTGTC TAGGCCACAC
  GCTCTGTCAA ATACGTTACA TTAATCCTTT ACAGCAACTC AGGGAGTCAG GCTAAAGGGA
  GATTATTATT CCTGTTTTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46929413	NES10803429	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30246923					SNP	G	G	G	G	G	G	G	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46929413	NES10803429	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52576755 () rs orientation: forward

Symbol	Name	Function Class
D3Mit276	DNA segment, Chr 3, Massachusetts Institute of Technology 276	604 bp distal
Gm30235	predicted gene, 30235	within coordinates
Rr576572	regulatory region 576572	704 bp distal
Rr576573	regulatory region 576573	1329 bp proximal