rs30250152 SNP Detail

Summary

• ID
  rs30250152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59789175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTC TGCCCTTCAG TCTCACGATG
  Y
  CCCTGCTACT CTAGATTAAG GCAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49116818	NES12421922	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T	C	C	C		C	T	T		T
ss149079726	ENSMUSSNP1054517	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
ss324357481	CHEV_13_59742722	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30250152					SNP	T	T	T	T	T	C	T	C	C	C	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49116818	NES12421922	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59789175 () rs orientation: forward

Symbol	Name	Function Class
Golm1	golgi membrane protein 1	within coordinates
Rr481236	regulatory region 481236	1620 bp distal
Rr481237	regulatory region 481237	1186 bp proximal
Tssr4093	transcription start site region 4093	1124 bp upstream
Tssr122874	transcription start site region 122874	1189 bp upstream
Tssr122875	transcription start site region 122875	1172 bp upstream