rs30250153 SNP Detail

Summary

• ID
  rs30250153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59789112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGACTAAAC AAAACCCAAC AAACAAAAAC ATCAGAAAAT
  AACATGGATT TGTATATCCC CAGACCCCCA GGGCAGTGCT AGGCTCTCAG TCATTTCAAG
  Y
  CGTGGGAGTC CAAGGGACAC CAGCCACCTA GGACTCCGTC TCTGCCCTTC AGTCTCACGA
  TGTCCCTGCT ACTCTAGATT AAGGCAACTT CTGTACCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49116819	NES12421920	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C		C	C		C
ss324357479	CHEV_13_59742659	CHEVERUD	SCREENING_POP	f	SNP									T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30250153					SNP	C	C	C	C	T	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49116819	NES12421920	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59789112 () rs orientation: forward

Symbol	Name	Function Class
Golm1	golgi membrane protein 1	within coordinates
Tssr4093	transcription start site region 4093	1061 bp upstream
Tssr122874	transcription start site region 122874	1126 bp upstream
Tssr122875	transcription start site region 122875	1109 bp upstream