rs30251616 SNP Detail

Summary

• ID
  rs30251616
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59752479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGCTGA GCAGAAGGCC
  AGCCTGATGA ATCCCTGCCT GGATTATGGG TTATAGTCAG TATGTAGCTT TTTTGGGTTC
  ACTGATTTTT GTTCATAAGC CCACAAAGTT TTCAAAACAT TTTAGTGGCT GCAATTTGTT
  TATGTGTCTC CCATGGAGTC ATTGTCATAG TGACTCAGAA TCAGTTCTTG TGAATGATGC
  W
  CACATGGTTT GACAGAGGTC AGATTCTGGT CAATGATGTA TCCATGGTTA CACAGAGCCT
  GCCATGTTCT GGAGGAACCT GGAGGTGGTA ACTGCTGCAG GGCCCTGGGG GAGCACTACT
  TGAGCACTGG TTTGCTCTGG CACATTCATC CTGCCTTCTT ACACCCAGGA CCACCACCAC
  ATGCCCGTCA GTAGGCTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49117067	NES12423916	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30251616					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49117067	NES12423916	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59752479 () rs orientation: forward

Symbol	Name	Function Class
Gm47246	predicted gene, 47246	within coordinates
Naa35	N(alpha)-acetyltransferase 35, NatC auxiliary subunit	within coordinates
Rr276812	regulatory region 276812	322 bp proximal
Rr279913	regulatory region 279913	989 bp proximal