rs30251617 SNP Detail

Summary

• ID
  rs30251617
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59752440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGTCTTC TATCCCCATT
  GATCTTAACA ATAGTGCACT GTGTGCTGAG CAGAAGGCCA GCCTGATGAA TCCCTGCCTG
  GATTATGGGT TATAGTCAGT ATGTAGCTTT TTTGGGTTCA CTGATTTTTG TTCATAAGCC
  CACAAAGTTT TCAAAACATT TTAGTGGCTG CAATTTGTTT ATGTGTCTCC CATGGAGTCA
  W
  TGTCATAGTG ACTCAGAATC AGTTCTTGTG AATGATGCAC ACATGGTTTG ACAGAGGTCA
  GATTCTGGTC AATGATGTAT CCATGGTTAC ACAGAGCCTG CCATGTTCTG GAGGAACCTG
  GAGGTGGTAA CTGCTGCAGG GCCCTGGGGG AGCACTACTT GAGCACTGGT TTGCTCTGGC
  ACATTCATCC TGCCTTCTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49117068	NES12423914	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30251617					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49117068	NES12423914	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59752440 () rs orientation: forward

Symbol	Name	Function Class
Gm47246	predicted gene, 47246	within coordinates
Naa35	N(alpha)-acetyltransferase 35, NatC auxiliary subunit	within coordinates
Rr276812	regulatory region 276812	361 bp proximal
Rr279913	regulatory region 279913	1028 bp proximal