rs30252808 SNP Detail

Summary

• ID
  rs30252808
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52247117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCG ACCAGGATGC GGGGACGTGA
  R
  CCCTGTGGGG AAAGATGCAC GTAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39166688	mCV24785379	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss139499019	ENSMUSSNP4314806	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss324626575	CHEV_14_52629335	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30252808					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52247117 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6435	CpG island 6435	within coordinates
D14Mit183	DNA segment, Chr 14, Massachusetts Institute of Technology 183	556 bp proximal
Rr369820	regulatory region 369820	813 bp downstream
Rr369821	regulatory region 369821	529 bp downstream
Rr491851	regulatory region 491851	804 bp distal
Rr491852	regulatory region 491852	647 bp distal
Rr491853	regulatory region 491853	595 bp distal
Rr491854	regulatory region 491854	536 bp distal
Tssr128467	transcription start site region 128467	948 bp upstream
Tssr128468	transcription start site region 128468	767 bp upstream
Tssr128469	transcription start site region 128469	674 bp upstream
Tssr128470	transcription start site region 128470	456 bp upstream
Tssr128471	transcription start site region 128471	25 bp upstream
Tssr128472	transcription start site region 128472	within coordinates
Tssr128473	transcription start site region 128473	1188 bp downstream
Tssr128474	transcription start site region 128474	1208 bp downstream
Zfp219	zinc finger protein 219	within coordinates