rs30253556 SNP Detail

Summary

• ID
  rs30253556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66362713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAAGACA TTTTCTGCCT
  TCCTGAGGAG AGACCAGTCA GTGCCACCCT TAAGCCTTTT CCTGGCATCC CGATAGAATC
  CTCCTTAGAA TTCTCCTTTA AGACTGTCAG TTGAAAATAT TTCATACTTT TAGCTTTCTA
  AAAACTATAC TTTTTAAAAA ATGGCTGAGA CAACCGCTAT AAGCTTGAAA GATTCTAGCC
  R
  TGAGAGTGTA CACCATGAAT CGGAGGATTT ACAGCAGGTT CATTTTCTCT GCAATGGGTA
  ATCACGAGCG ACTTAATTTA TTCATCCCAC AAGCATTGCT GAAGAGCCCG GCTTCTGTGG
  GTAGTCCCAG CACAAGAGAG GAAGAGACAC ATGGCACTGT CCTCAGGCTT CCAACGCGTA
  GGCTCAACCA TACATGATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47429726	NES11024596	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30253556					SNP	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47429726	NES11024596	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66362713 () rs orientation: forward

Symbol	Name	Function Class
Gm10558	predicted gene 10558	within coordinates
Map2	microtubule-associated protein 2	within coordinates
Tssr7142	transcription start site region 7142	1839 bp downstream
Tssr7143	transcription start site region 7143	1815 bp downstream
Tssr7144	transcription start site region 7144	1798 bp downstream
Tssr7145	transcription start site region 7145	1748 bp downstream
Tssr7146	transcription start site region 7146	1734 bp downstream
Tssr7147	transcription start site region 7147	1693 bp downstream
Tssr7148	transcription start site region 7148	1574 bp downstream
Tssr7149	transcription start site region 7149	1542 bp downstream
Tssr7150	transcription start site region 7150	1510 bp downstream
Tssr7151	transcription start site region 7151	1481 bp downstream
Tssr7152	transcription start site region 7152	1464 bp downstream
Tssr7153	transcription start site region 7153	1435 bp downstream
Tssr7154	transcription start site region 7154	393 bp upstream