rs30253562 SNP Detail

Summary

• ID
  rs30253562
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:66362791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGG GTAATCACGA GCGACTTAAT
  K
  TATTCATCCC ACAAGCATTG CTGAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47429732	NES11024600	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	G		T	T	T		G
ss144494237	ENSMUSSNP4842880	ENSEMBL	ENSEMBL_Sanger	f	SNP	G						G
ss319754090	CHEV_1_66370206	CHEVERUD	SCREENING_POP	f	SNP									G				G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30253562					SNP	G	G	T	G	G	G	G	G	G	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47429732	NES11024600	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66362791 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm10558	predicted gene 10558			within coordinates
Map2	microtubule-associated protein 2			Intron
				Noncoding-Transcript-Variant
Rr412442	regulatory region 412442			1903 bp distal
Rr412443	regulatory region 412443			702 bp distal
Rr412444	regulatory region 412444			within coordinates
Tssr7142	transcription start site region 7142			1917 bp downstream
Tssr7143	transcription start site region 7143			1893 bp downstream
Tssr7144	transcription start site region 7144			1876 bp downstream
Tssr7145	transcription start site region 7145			1826 bp downstream
Tssr7146	transcription start site region 7146			1812 bp downstream
Tssr7147	transcription start site region 7147			1771 bp downstream
Tssr7148	transcription start site region 7148			1652 bp downstream
Tssr7149	transcription start site region 7149			1620 bp downstream
Tssr7150	transcription start site region 7150			1588 bp downstream
Tssr7151	transcription start site region 7151			1559 bp downstream
Tssr7152	transcription start site region 7152			1542 bp downstream
Tssr7153	transcription start site region 7153			1513 bp downstream
Tssr7154	transcription start site region 7154			315 bp upstream