rs30254345 SNP Detail

Summary

• ID
  rs30254345
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66362892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACT GTCCTCAGGC TTCCAACGCG
  K
  AGGCTCAACC ATACATGATT CTGAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47429735	NES11024601	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T	G	G	G	G	G		T	T	T		G
ss144494242	ENSMUSSNP5926513	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss319754091	CHEV_1_66370307	CHEVERUD	SCREENING_POP	f	SNP										G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30254345					SNP	T	G	G	T	G	G	G	G	G	G	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47429735	NES11024601	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66362892 () rs orientation: forward

Symbol	Name	Function Class
Gm10558	predicted gene 10558	within coordinates
Map2	microtubule-associated protein 2	within coordinates
Rr412443	regulatory region 412443	803 bp distal
Rr412444	regulatory region 412444	within coordinates
Tssr7143	transcription start site region 7143	1994 bp downstream
Tssr7144	transcription start site region 7144	1977 bp downstream
Tssr7145	transcription start site region 7145	1927 bp downstream
Tssr7146	transcription start site region 7146	1913 bp downstream
Tssr7147	transcription start site region 7147	1872 bp downstream
Tssr7148	transcription start site region 7148	1753 bp downstream
Tssr7149	transcription start site region 7149	1721 bp downstream
Tssr7150	transcription start site region 7150	1689 bp downstream
Tssr7151	transcription start site region 7151	1660 bp downstream
Tssr7152	transcription start site region 7152	1643 bp downstream
Tssr7153	transcription start site region 7153	1614 bp downstream
Tssr7154	transcription start site region 7154	214 bp upstream