rs30254351 SNP Detail

Summary

• ID
  rs30254351
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66363039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGC ATTTTCCTTG TCTCAGAAAT
  Y
  CGTCAGGAGA ATTATGTATC TAAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47429741	NES11024605	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	C	C		C		T	T	T		C
ss144494254	ENSMUSSNP6493315	ENSEMBL	ENSEMBL_Sanger	f	SNP	C						C
ss319754093	CHEV_1_66370454	CHEVERUD	SCREENING_POP	f	SNP									C				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30254351					SNP	C	C	T	C	C	C	C	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47429741	NES11024605	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66363039 () rs orientation: forward

Symbol	Name	Function Class
Gm10558	predicted gene 10558	within coordinates
Map2	microtubule-associated protein 2	within coordinates
Tssr7148	transcription start site region 7148	1900 bp downstream
Tssr7149	transcription start site region 7149	1868 bp downstream
Tssr7150	transcription start site region 7150	1836 bp downstream
Tssr7151	transcription start site region 7151	1807 bp downstream
Tssr7152	transcription start site region 7152	1790 bp downstream
Tssr7153	transcription start site region 7153	1761 bp downstream
Tssr7154	transcription start site region 7154	67 bp upstream