rs30254646 SNP Detail

Summary

• ID
  rs30254646
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48408620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGA GTAATGCCAC TCTTTATTAA
  S
  CGGTAAAGAT GGCTTCCCAT GTTAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46389187	mCV25192135	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
ss136454999	ENSMUSSNP3483461	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss322954396	CHEV_9_48305425	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30254646					SNP	C	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48408620 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	963 bp upstream
Cpgi21716	CpG island 21716	1300 bp distal
Gm5617	predicted gene 5617	1348 bp downstream
Gm70225	predicted gene, 70225	within coordinates
Rr195326	regulatory region 195326	420 bp distal
Rr206379	regulatory region 206379	819 bp distal
Rr401354	regulatory region 401354	1802 bp downstream
Tssr2862	transcription start site region 2862	1422 bp upstream
Tssr84992	transcription start site region 84992	1920 bp downstream
Tssr84993	transcription start site region 84993	1869 bp downstream
Tssr84994	transcription start site region 84994	1410 bp downstream
Tssr89396	transcription start site region 89396	1985 bp upstream