rs30254845 SNP Detail

Summary

• ID
  rs30254845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121505587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGAAGGAC TATTATCTAT TTCTGGCCTT TTAATAATTT
  TAAAATATAC ACTTGAAAAA CTCTTTGTCT ACCCCTCTCC CCTTTTTTGG GTTCATGTGG
  R
  TGATTAAGGA TTATAGTCAT TCCTTTCATG GTATTCTTTT TTTTTTTCCT GTACAAAATT
  GCATTCCTTG GGTGCTACTT CAGGGTCTGA AGGTACAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45432183	mCV23476263	ABI	CRAMUS_MOUSE	f	SNP		G					G		A
ss46929936	NES10690341	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	A	G	G		G	G		G
ss135727251	ENSMUSSNP6656541	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
ss320905044	CHEV_3_121414856	CHEVERUD	SCREENING_POP	f	SNP												G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30254845					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46929936	NES10690341	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121505587 () rs orientation: forward

Symbol	Name	Function Class
Gm43607	predicted gene 43607	within coordinates
Gm43608	predicted gene 43608	1692 bp upstream
Rr584146	regulatory region 584146	1210 bp proximal