rs30255411 SNP Detail

Summary

• ID
  rs30255411
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149147792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTAGAGTA ACCATTCCTG
  GCATGCCACC AGTGAAATAA CTCTTTAAGA CTGCTATAAT GCTAATACAG ATCAAAAGGA
  AAAGCGATGA AGAAGTTGAA AAACCAGAAA AAGACACCTA GTTCTGGTAT GTCCAGACAA
  CAGATGGGTA AGTTGGATAA GATATGTTTG CTATAGGGAG AGGGAAAGAA GTACACTGAC
  M
  GATAAGCCAG GAAGTCATCG TTATATGTGA TTTCAAAGGA AAGGCAGGTT CAAATCCCAT
  GTCTGCACAA CTCCATGGCC TTGACAAAGT CAATTAACTT CTCGGAACCT TCATGGTTTT
  ATCTACAAAG TGTGTACAAT GGTCCCCTTG ACCTGACAGC ATTGCTATGA AGATTAAAAT
  TATTGCAAAC AAAGCAATAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45411612	mCV24054260	ABI	CRAMUS_MOUSE	f	SNP		A	C					C		C
ss51052158	NES13893076	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C		A	C	C	C		C	C	A		C
ss136071428	ENSMUSSNP6327737	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							C
ss321018991	CHEV_3_149105119	CHEVERUD	SCREENING_POP	f	SNP													C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30255411					SNP	A	A	C	C	C	A	C	C	A	C	C	C	C	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052158	NES13893076	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149147792 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	1199 bp upstream
Gm30382	predicted gene, 30382	within coordinates