rs30256659 SNP Detail

Summary

• ID
  rs30256659
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121506891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCCTAGGC CTCCGCAACA CTTTTGTTCA ACATGTGTCA
  TGGGTGTGAC ACTTGGCTCT AGAGCCCTGT TTCTGCTCTC ACCCCTCTAG GCTCTGTGGG
  M
  ACTCGAGGTA CCCTGCAGAA CCTTCTCCTG TCATGATGCT TTCCGGGAGC TTAGGCATAG
  ATGCTATCAG GCTGGGTCGG TACAAGTGCG TATGTTCTG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45565871	mCV23476251	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		C
ss46929960	NES10690351	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	C	A	A			A	A		A
ss135727287	ENSMUSSNP5865920	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							C				C
ss320905052	CHEV_3_121416160	CHEVERUD	SCREENING_POP	f	SNP													A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30256659					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46929960	NES10690351	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121506891 () rs orientation: forward

Symbol	Name	Function Class
Gm43607	predicted gene 43607	796 bp upstream
Rr584146	regulatory region 584146	within coordinates