rs30256899 SNP Detail

Summary

• ID
  rs30256899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:84257861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCTCACT CTCGTCTGTG
  TTCCTGCTGT CAATTTGGTT GGCCTGGCAA ACTGTCCAGC TGCCCAAGCC TTCAGTCTGC
  CTGATGAGCC AGGTCTAACG TTTCCAGCCG CTGTGATAGA GGGCTTGTCA GTATTGCTTC
  TCGGGGGACA AGGGAAACCA CCATGATAAC AGAGAAATCA ATCTAGAACA ATCCACTCAG
  Y
  ATCGGGTAAA GATACAGCAG GCACGGCAGA GCAGGGCAGG CACAAGACAA TTCTGAGGAA
  CAATATACTC TTTCCCCTCT CTAAATCACT CAAGCAACAT TTTAATGGAA AACTTTGGTC
  ACAGTTTAGA TGGGAAATAC CCCCCACAGG CTCATGTATT TGGTTGCTTG ATCCCCAGCT
  AGTGACTCCA TTGTGAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49617146	NES12947579	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30256899					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49617146	NES12947579	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84257861 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	Intron
Rr414250	regulatory region 414250	898 bp distal
Tssr12655	transcription start site region 12655	1820 bp upstream
Tssr12656	transcription start site region 12656	1761 bp upstream
Tssr12657	transcription start site region 12657	1704 bp upstream
Tssr12658	transcription start site region 12658	1681 bp upstream
Tssr12659	transcription start site region 12659	1654 bp upstream
Tssr12660	transcription start site region 12660	1208 bp upstream
Tssr12661	transcription start site region 12661	198 bp upstream
Tssr12662	transcription start site region 12662	1797 bp downstream
Tssr12663	transcription start site region 12663	1846 bp downstream