rs30256900 SNP Detail

Summary

• ID
  rs30256900
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:84257851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGCTATC CCCCCTCACT
  CTCGTCTGTG TTCCTGCTGT CAATTTGGTT GGCCTGGCAA ACTGTCCAGC TGCCCAAGCC
  TTCAGTCTGC CTGATGAGCC AGGTCTAACG TTTCCAGCCG CTGTGATAGA GGGCTTGTCA
  GTATTGCTTC TCGGGGGACA AGGGAAACCA CCATGATAAC AGAGAAATCA ATCTAGAACA
  W
  TCCACTCAGC ATCGGGTAAA GATACAGCAG GCACGGCAGA GCAGGGCAGG CACAAGACAA
  TTCTGAGGAA CAATATACTC TTTCCCCTCT CTAAATCACT CAAGCAACAT TTTAATGGAA
  AACTTTGGTC ACAGTTTAGA TGGGAAATAC CCCCCACAGG CTCATGTATT TGGTTGCTTG
  ATCCCCAGCT AGTGACTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49617147	NES12947577	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30256900					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49617147	NES12947577	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84257851 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	within coordinates
Rr414250	regulatory region 414250	888 bp distal
Tssr12655	transcription start site region 12655	1810 bp upstream
Tssr12656	transcription start site region 12656	1751 bp upstream
Tssr12657	transcription start site region 12657	1694 bp upstream
Tssr12658	transcription start site region 12658	1671 bp upstream
Tssr12659	transcription start site region 12659	1644 bp upstream
Tssr12660	transcription start site region 12660	1198 bp upstream
Tssr12661	transcription start site region 12661	188 bp upstream
Tssr12662	transcription start site region 12662	1807 bp downstream
Tssr12663	transcription start site region 12663	1856 bp downstream