rs30256952 SNP Detail

Summary

• ID
  rs30256952
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66359412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC ATGCTTGTAA AAACAACAAT
  S
  CCAATAATGT CAGAAGTCCC AGGCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss47429672	NES11024553	PERLEGEN	MM_PANEL2	f	SNP	G	C		G	C	G
ss319754062	CHEV_1_66366827	CHEVERUD	SCREENING_POP	f	SNP			C				C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30256952					SNP	G	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47429672	NES11024553	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66359412 () rs orientation: forward

Symbol	Name	Function Class
Map2	microtubule-associated protein 2	within coordinates
Tssr7142	transcription start site region 7142	1455 bp upstream
Tssr7143	transcription start site region 7143	1479 bp upstream
Tssr7144	transcription start site region 7144	1500 bp upstream
Tssr7145	transcription start site region 7145	1542 bp upstream
Tssr7146	transcription start site region 7146	1556 bp upstream
Tssr7147	transcription start site region 7147	1572 bp upstream
Tssr7148	transcription start site region 7148	1718 bp upstream
Tssr7149	transcription start site region 7149	1738 bp upstream
Tssr7150	transcription start site region 7150	1768 bp upstream
Tssr7151	transcription start site region 7151	1793 bp upstream
Tssr7152	transcription start site region 7152	1826 bp upstream
Tssr7153	transcription start site region 7153	1855 bp upstream