rs30257754 SNP Detail

Summary

• ID
  rs30257754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:84257047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGA ACACTCCAGC TTTGTGCTTT
  R
  CAATAAGAGG TGCAAAAATT GCAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49617151	NES12947631	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	G	G		A	A	G	A		A
ss319824325	CHEV_1_84275901	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30257754					SNP	G	G	A	G	G	G	A	G	G	G	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49617151	NES12947631	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84257047 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	Intron
Rr414250	regulatory region 414250	84 bp distal
Tssr12655	transcription start site region 12655	1006 bp upstream
Tssr12656	transcription start site region 12656	947 bp upstream
Tssr12657	transcription start site region 12657	890 bp upstream
Tssr12658	transcription start site region 12658	867 bp upstream
Tssr12659	transcription start site region 12659	840 bp upstream
Tssr12660	transcription start site region 12660	394 bp upstream
Tssr12661	transcription start site region 12661	605 bp downstream