rs30257763 SNP Detail

Summary

• ID
  rs30257763
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:84255070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAGTTGC AACACACACC
  AAGGGACAAA ATAATACTAA GCTCAAGTTG GAGACAAAAA CTGAGTCCTC CAAAGTATAC
  AATGATATCC TTCCTTTCTG GAAGCTTCTC AACATACCTT CACCCTGCGG AGGGCTTGGG
  ACCTGTTACA TGTGTGTACT ATCATGGCAA ATGGGAGAGA AACACACTTC TGTCCAGTGA
  K
  AGTATTGTAT ATTACAAAGC CTCTGCCAAG CAGCTACTTC TGAGGCATAG ATAGAGAACA
  CAAAACTCAG AGAAGTTATA AGACTAAATG ATGGGACTGC AAAGAGAGTG CAGTCAGGGA
  AGTTTCTGTC ACCTAAGCAG CAGGATTCAA GTTTGTTCTC CAAGGTGGCA GCGAGTGCTT
  TTAATCACAA TACTGGGAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49617160	NES12947648	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30257763					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49617160	NES12947648	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84255070 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	Intron
Rr414250	regulatory region 414250	938 bp proximal
Tssr7647	transcription start site region 7647	455 bp downstream
Tssr12655	transcription start site region 12655	946 bp downstream
Tssr12656	transcription start site region 12656	994 bp downstream
Tssr12657	transcription start site region 12657	1068 bp downstream
Tssr12658	transcription start site region 12658	1097 bp downstream
Tssr12659	transcription start site region 12659	1124 bp downstream
Tssr12660	transcription start site region 12660	1570 bp downstream