rs30257798 SNP Detail

Summary

• ID
  rs30257798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66359478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGA ACAAGATAGA TCTGCAAAGG
  R
  CAGTTGATCC ATCTGACTGC CAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss47429678	NES11024558	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A		G	A	G
ss319754064	CHEV_1_66366893	CHEVERUD	SCREENING_POP	f	SNP								A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30257798					SNP	A	A	G	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47429678	NES11024558	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66359478 () rs orientation: forward

Symbol	Name	Function Class
Gm10558	predicted gene 10558	1957 bp downstream
Map2	microtubule-associated protein 2	within coordinates
Rr412442	regulatory region 412442	910 bp proximal
Rr412443	regulatory region 412443	1411 bp proximal
Tssr7142	transcription start site region 7142	1389 bp upstream
Tssr7143	transcription start site region 7143	1413 bp upstream
Tssr7144	transcription start site region 7144	1434 bp upstream
Tssr7145	transcription start site region 7145	1476 bp upstream
Tssr7146	transcription start site region 7146	1490 bp upstream
Tssr7147	transcription start site region 7147	1506 bp upstream
Tssr7148	transcription start site region 7148	1652 bp upstream
Tssr7149	transcription start site region 7149	1672 bp upstream
Tssr7150	transcription start site region 7150	1702 bp upstream
Tssr7151	transcription start site region 7151	1727 bp upstream
Tssr7152	transcription start site region 7152	1760 bp upstream
Tssr7153	transcription start site region 7153	1789 bp upstream