rs30257801 SNP Detail

Summary

• ID
  rs30257801
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66359649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATG TTGCTTCTGC AAATGAAAGG
  K
  TGACAAGATC AAAGGCACAG GATCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45100560	mCV24304764	ABI	CRAMUS_MOUSE	f	SNP		G	G					T	G
ss47429681	NES11024561	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	T	G	G		G	G	G		T	G	T
ss319754069	CHEV_1_66367064	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30257801					SNP	G	G	G	G	T	G	G	T	G	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47429681	NES11024561	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66359649 () rs orientation: forward

Symbol	Name	Function Class
Gm10558	predicted gene 10558	1786 bp downstream
Map2	microtubule-associated protein 2	within coordinates
Rr412442	regulatory region 412442	739 bp proximal
Rr412443	regulatory region 412443	1240 bp proximal
Tssr7142	transcription start site region 7142	1218 bp upstream
Tssr7143	transcription start site region 7143	1242 bp upstream
Tssr7144	transcription start site region 7144	1263 bp upstream
Tssr7145	transcription start site region 7145	1305 bp upstream
Tssr7146	transcription start site region 7146	1319 bp upstream
Tssr7147	transcription start site region 7147	1335 bp upstream
Tssr7148	transcription start site region 7148	1481 bp upstream
Tssr7149	transcription start site region 7149	1501 bp upstream
Tssr7150	transcription start site region 7150	1531 bp upstream
Tssr7151	transcription start site region 7151	1556 bp upstream
Tssr7152	transcription start site region 7152	1589 bp upstream
Tssr7153	transcription start site region 7153	1618 bp upstream