rs30258664 SNP Detail

Summary

• ID
  rs30258664
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:84254773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATG GTGCATACTT TCCCATTGGA
  M
  AAGACTGGAG GACCTTCCTT AGTGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49617161	NES12947647	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	C	A	A	A		C	C	A	C		C
ss319824308	CHEV_1_84273627	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30258664					SNP	A	A	C	A	A	A	C	A	A	A	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49617161	NES12947647	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84254773 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	Intron
Rr414250	regulatory region 414250	1235 bp proximal
Tssr7647	transcription start site region 7647	158 bp downstream
Tssr12654	transcription start site region 12654	1938 bp upstream
Tssr12655	transcription start site region 12655	1243 bp downstream
Tssr12656	transcription start site region 12656	1291 bp downstream
Tssr12657	transcription start site region 12657	1365 bp downstream
Tssr12658	transcription start site region 12658	1394 bp downstream
Tssr12659	transcription start site region 12659	1421 bp downstream
Tssr12660	transcription start site region 12660	1867 bp downstream