rs30258704 SNP Detail

Summary

• ID
  rs30258704
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66360445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG GGACAGCAAA GTCCCAGTCC
  W
  CAAACTGGTT GTCACCTTCT TTTGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47429684	NES11024563	PERLEGEN	MM_PANEL2	f	SNP		A	A	T	A			T	T	T		A
ss144494115	ENSMUSSNP6720881	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A				A
ss319754070	CHEV_1_66367860	CHEVERUD	SCREENING_POP	f	SNP							A				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30258704					SNP	A	A	A	T	A	A	A	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47429684	NES11024563	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66360445 () rs orientation: forward

Symbol	Name	Function Class
Gm10558	predicted gene 10558	990 bp downstream
Map2	microtubule-associated protein 2	within coordinates
Rr412442	regulatory region 412442	within coordinates
Rr412443	regulatory region 412443	444 bp proximal
Rr412444	regulatory region 412444	1804 bp proximal
Tssr7142	transcription start site region 7142	422 bp upstream
Tssr7143	transcription start site region 7143	446 bp upstream
Tssr7144	transcription start site region 7144	467 bp upstream
Tssr7145	transcription start site region 7145	509 bp upstream
Tssr7146	transcription start site region 7146	523 bp upstream
Tssr7147	transcription start site region 7147	539 bp upstream
Tssr7148	transcription start site region 7148	685 bp upstream
Tssr7149	transcription start site region 7149	705 bp upstream
Tssr7150	transcription start site region 7150	735 bp upstream
Tssr7151	transcription start site region 7151	760 bp upstream
Tssr7152	transcription start site region 7152	793 bp upstream
Tssr7153	transcription start site region 7153	822 bp upstream