rs30258710 SNP Detail

Summary

• ID
  rs30258710
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:66361155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT AATTTGCAGC TTCCCTTTCC
  R
  CGGCACACAC AGACAGGAGC TGGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44970893	mCV24304787	ABI	CRAMUS_MOUSE	f	SNP		G					A		G
ss47429690	NES11024569	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	G	G		G	G	G		A	A	A		G
ss144494134	ENSMUSSNP1481248	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss319754073	CHEV_1_66368570	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30258710					SNP	A	G	G	A	G	G	A	G	G	G	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47429690	NES11024569	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66361155 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm10558	predicted gene 10558			280 bp downstream
Map2	microtubule-associated protein 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr412442	regulatory region 412442			267 bp distal
Rr412443	regulatory region 412443			within coordinates
Rr412444	regulatory region 412444			1094 bp proximal
Tssr7142	transcription start site region 7142			281 bp downstream
Tssr7143	transcription start site region 7143			257 bp downstream
Tssr7144	transcription start site region 7144			240 bp downstream
Tssr7145	transcription start site region 7145			190 bp downstream
Tssr7146	transcription start site region 7146			176 bp downstream
Tssr7147	transcription start site region 7147			135 bp downstream
Tssr7148	transcription start site region 7148			16 bp downstream
Tssr7149	transcription start site region 7149			within coordinates
Tssr7150	transcription start site region 7150			25 bp upstream
Tssr7151	transcription start site region 7151			50 bp upstream
Tssr7152	transcription start site region 7152			83 bp upstream
Tssr7153	transcription start site region 7153			112 bp upstream
Tssr7154	transcription start site region 7154			1951 bp upstream