rs30258713 SNP Detail

Summary

• ID
  rs30258713
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66361253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTT CCTGAAGCAG GGTTCTGCGG
  Y
  GGCAGCTCTT ACAGACTCCA TTCGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45130629	mCV24304788	ABI	CRAMUS_MOUSE	f	SNP		C				T		C
ss47429693	NES11024572	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C		C		C		T	T	T		C
ss144494137	ENSMUSSNP1127563	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss319754074	CHEV_1_66368668	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30258713					SNP	T	C	C	T	C	T	C	C	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47429693	NES11024572	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66361253 () rs orientation: forward

Symbol	Name	Function Class
Gm10558	predicted gene 10558	182 bp downstream
Map2	microtubule-associated protein 2	within coordinates
Rr412442	regulatory region 412442	365 bp distal
Rr412443	regulatory region 412443	within coordinates
Rr412444	regulatory region 412444	996 bp proximal
Tssr7142	transcription start site region 7142	379 bp downstream
Tssr7143	transcription start site region 7143	355 bp downstream
Tssr7144	transcription start site region 7144	338 bp downstream
Tssr7145	transcription start site region 7145	288 bp downstream
Tssr7146	transcription start site region 7146	274 bp downstream
Tssr7147	transcription start site region 7147	233 bp downstream
Tssr7148	transcription start site region 7148	114 bp downstream
Tssr7149	transcription start site region 7149	82 bp downstream
Tssr7150	transcription start site region 7150	50 bp downstream
Tssr7151	transcription start site region 7151	21 bp downstream
Tssr7152	transcription start site region 7152	4 bp downstream
Tssr7153	transcription start site region 7153	14 bp upstream
Tssr7154	transcription start site region 7154	1853 bp upstream