rs30259310 SNP Detail

Summary

• ID
  rs30259310
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121503162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCCACTGA GTCTCGCCAG CTGAAATCTG CAGCCATGAG
  TTGTTTGCCG GGTCCTTTCA GGTCCTTGCC CTGCGTCTAG ATTTGAATTC ACACTGGCAT
  Y
  CGTGGCTGAG GAGCAAATGA CTTAGATGAC AGGCATGGCA TGAGTGATAA CTCGGATACC
  CATGGCTGCC TCCAGGGTTA GAAAGAAAGC AAAGTCGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46929891	NES10690482	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	T	C		T	C	C	T		C
ss135727204	ENSMUSSNP5634204	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss320905026	CHEV_3_121412431	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30259310					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46929891	NES10690482	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121503162 () rs orientation: forward

Symbol	Name	Function Class
D3Mit288	DNA segment, Chr 3, Massachusetts Institute of Technology 288	674 bp distal
Gm43607	predicted gene 43607	1743 bp downstream
Gm43608	predicted gene 43608	within coordinates