rs30259529 SNP Detail

Summary

• ID
  rs30259529
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66361724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAC CCTCATGGCT GGTTTTTTAT
  Y
  CCAGAGTGGA TTGTCTGATC TTTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45043460	mCV24305071	ABI	CRAMUS_MOUSE	f	SNP	T					C
ss47429699	NES11024578	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T		C	T		C	C	C		C
ss144494166	ENSMUSSNP6686269	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss319754078	CHEV_1_66369139	CHEVERUD	SCREENING_POP	f	SNP									T				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30259529					SNP	T	T	C	T	T	C	C	T	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47429699	NES11024578	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66361724 () rs orientation: forward

Symbol	Name	Function Class
Gm10558	predicted gene 10558	within coordinates
Map2	microtubule-associated protein 2	within coordinates
Rr412442	regulatory region 412442	836 bp distal
Rr412443	regulatory region 412443	within coordinates
Rr412444	regulatory region 412444	525 bp proximal
Tssr7142	transcription start site region 7142	850 bp downstream
Tssr7143	transcription start site region 7143	826 bp downstream
Tssr7144	transcription start site region 7144	809 bp downstream
Tssr7145	transcription start site region 7145	759 bp downstream
Tssr7146	transcription start site region 7146	745 bp downstream
Tssr7147	transcription start site region 7147	704 bp downstream
Tssr7148	transcription start site region 7148	585 bp downstream
Tssr7149	transcription start site region 7149	553 bp downstream
Tssr7150	transcription start site region 7150	521 bp downstream
Tssr7151	transcription start site region 7151	492 bp downstream
Tssr7152	transcription start site region 7152	475 bp downstream
Tssr7153	transcription start site region 7153	446 bp downstream
Tssr7154	transcription start site region 7154	1382 bp upstream