rs30259532 SNP Detail

Summary

• ID
  rs30259532
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66361791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT ATGCAGATTT CACCATCAGC
  S
  GAGGCTATTT TGAATAGAAA GTATC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44993397	mCV24305072	ABI	CRAMUS_MOUSE	f	SNP	G		C
ss47429702	NES11024580	PERLEGEN	MM_PANEL2	f	SNP		C			C	C	C		G
ss144494171	ENSMUSSNP2616166	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss319754079	CHEV_1_66369206	CHEVERUD	SCREENING_POP	f	SNP				G				G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30259532					SNP	G	C	C	G	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47429702	NES11024580	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66361791 () rs orientation: forward

Symbol	Name	Function Class
Gm10558	predicted gene 10558	within coordinates
Map2	microtubule-associated protein 2	within coordinates
Rr412442	regulatory region 412442	903 bp distal
Rr412443	regulatory region 412443	within coordinates
Rr412444	regulatory region 412444	458 bp proximal
Tssr7142	transcription start site region 7142	917 bp downstream
Tssr7143	transcription start site region 7143	893 bp downstream
Tssr7144	transcription start site region 7144	876 bp downstream
Tssr7145	transcription start site region 7145	826 bp downstream
Tssr7146	transcription start site region 7146	812 bp downstream
Tssr7147	transcription start site region 7147	771 bp downstream
Tssr7148	transcription start site region 7148	652 bp downstream
Tssr7149	transcription start site region 7149	620 bp downstream
Tssr7150	transcription start site region 7150	588 bp downstream
Tssr7151	transcription start site region 7151	559 bp downstream
Tssr7152	transcription start site region 7152	542 bp downstream
Tssr7153	transcription start site region 7153	513 bp downstream
Tssr7154	transcription start site region 7154	1315 bp upstream