rs30259536 SNP Detail

Summary

• ID
  rs30259536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127484564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGTTTGT GTATGTTTGG
  GGAGGGGATG GGAGTGGGCA GGGTATATGC ATGTGAGGGC AGGTGCCCAC AAAAGCCAGA
  AGGGGCATCA GATACCCTGG AGCTAGAGTT ATAGGTGGTT GTCATCCACC TAACATGGGT
  GCTGGGAACT GAACCCAAGT TCTCTGCAAG AGCTGCATGT AGTTTTAACT ATTAAGCCAT
  Y
  CCTCTAGGCC ACTATGGGTT ATTTCTGATA TAATGCTTTT AGTCATGTCT AATTATGTTT
  TCCATGTTAA TGATTTGCCT TTTCTTTCTG ATTTCTTTAA GATTTTCTCA TTGTTGGTTT
  TTGTGTTATT TTGCCACACT GGGTCTAGAT TTGTCTCGCT TCTAGATCTA CTTGATCCTT
  CTGTAAATCC TCTCATTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45411651	mCV23994705	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30259536					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127484564 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Gm16238	predicted gene 16238	1020 bp downstream
Tssr35587	transcription start site region 35587	132 bp upstream
Tssr35588	transcription start site region 35588	376 bp downstream
Tssr35589	transcription start site region 35589	1631 bp downstream