rs30260004 SNP Detail

Summary

• ID
  rs30260004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134582125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAA CTACACGAGA CCAGGAAGAA
  Y
  AACAGTCACC TTGGAAGAGC ATAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45909156	mCV24123665	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss133782467	ENSMUSSNP6650013	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321980819	CHEV_6_134555180	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs30260004					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134582125 () rs orientation: forward

Symbol	Name	Function Class
Gm38910	predicted gene, 38910	72 bp downstream
Rr133397	regulatory region 133397	925 bp distal
Rr147832	regulatory region 147832	1326 bp distal
Rr147833	regulatory region 147833	877 bp proximal
Tssr59244	transcription start site region 59244	608 bp upstream