rs30260236 SNP Detail

Summary

• ID
  rs30260236
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121503353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGCATC CGTGGCTGAG
  GAGCAAATGA CTTAGATGAC AGGCATGGCA TGAGTGATAA CTCGGATACC CATGGCTGCC
  TCCAGGGTTA GAAAGAAAGC AAAGTCGTCA GGAAAGGAAC AGCCTAGCTC CTCAGCCTGG
  AATCCTCCAC ACGACCGCTC CAAAGGAAGT AGAGATGAGA TGCTTGGTGT GCAGAGAGCA
  W
  AGATCACCTT CTACATCTGA GGGTTCTGCA TGGGTCCAGA CAACGTCGCA TCATAAACAA
  ATTGCATCTA CATTGAACGT GTATAGACAT TTTTTTCCTT GTCATTATTC CCTGGTTCAT
  ATCCCATAAC ACCTATTAGA TAGCACTAGT ACTAGGTACT GTAAGCAATT AGAGATTATT
  TTAAAGTGTG TAGAAGTAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46929897	NES10690484	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30260236					SNP	A	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46929897	NES10690484	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121503353 () rs orientation: forward

Symbol	Name	Function Class
D3Mit288	DNA segment, Chr 3, Massachusetts Institute of Technology 288	865 bp distal
Gm43607	predicted gene 43607	1552 bp downstream
Gm43608	predicted gene 43608	within coordinates