GCTGC AAATACTAAG AAATATCAGC W TGCCTAGCTC ATCTGTAATG TTTGG W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
C57BL/6J |
FVB/NJ |
LG/J |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss45060868 | mCV24305083 | ABI | CRAMUS_MOUSE | f | SNP | A | A | T | ||||||||||
ss47429705 | NES11024582 | PERLEGEN | MM_PANEL2 | f | SNP | A | T | A | A | T | T | T | A | |||||
ss144494183 | ENSMUSSNP1414181 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | A | |||||||||||
ss319754081 | CHEV_1_66369282 | CHEVERUD | SCREENING_POP | f | SNP | A | A | |||||||||||
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
C57BL/6J |
FVB/NJ |
LG/J |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs30260355 | SNP | A | A | A | T | A | T | A | A | T | T | T | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47429705 | NES11024582 | PERLEGEN | MM_PANEL | f | SNP | A/T |
Location: Chr1:66361867 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm10558 | predicted gene 10558 | within coordinates | ||||||
Map2 | microtubule-associated protein 2 | within coordinates | ||||||
Rr412442 | regulatory region 412442 | 979 bp distal | ||||||
Rr412443 | regulatory region 412443 | within coordinates | ||||||
Rr412444 | regulatory region 412444 | 382 bp proximal | ||||||
Tssr7142 | transcription start site region 7142 | 993 bp downstream | ||||||
Tssr7143 | transcription start site region 7143 | 969 bp downstream | ||||||
Tssr7144 | transcription start site region 7144 | 952 bp downstream | ||||||
Tssr7145 | transcription start site region 7145 | 902 bp downstream | ||||||
Tssr7146 | transcription start site region 7146 | 888 bp downstream | ||||||
Tssr7147 | transcription start site region 7147 | 847 bp downstream | ||||||
Tssr7148 | transcription start site region 7148 | 728 bp downstream | ||||||
Tssr7149 | transcription start site region 7149 | 696 bp downstream | ||||||
Tssr7150 | transcription start site region 7150 | 664 bp downstream | ||||||
Tssr7151 | transcription start site region 7151 | 635 bp downstream | ||||||
Tssr7152 | transcription start site region 7152 | 618 bp downstream | ||||||
Tssr7153 | transcription start site region 7153 | 589 bp downstream | ||||||
Tssr7154 | transcription start site region 7154 | 1239 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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