rs30260392 SNP Detail

Summary

• ID
  rs30260392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38939743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATAGAAAG GAGTTGGGGG TGGTCGCCCC CTTCTTAGCG
  CCTCCGCCGC CGTGGGGCTC GCCCACCTCC CGCCCACAGC CTCGGAGGCC ACGGTGACGA
  R
  CGTCGCCCCA GCCAGTGGCG GCTGGAGGCT AGGGCGGCGG GGACGCGGGG CGGGGCTGTG
  GCCAATGAGC TGTAGCGGGG CAGGGCCCGC GGGTGACAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45411670	mCV25414930	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss134846133	ENSMUSSNP3807908	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320724094	CHEV_3_38784516	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30260392					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38939743 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	within coordinates
Fat4	FAT atypical cadherin 4	1346 bp upstream
Gm56780	predicted gene, 56780	95 bp upstream
Gm65329	predicted gene, 65329	48 bp upstream
Rr575717	regulatory region 575717	59 bp distal
Rr575718	regulatory region 575718	1100 bp distal
Rr575719	regulatory region 575719	within coordinates
Rr575720	regulatory region 575720	508 bp proximal
Rr575721	regulatory region 575721	856 bp proximal
Tssr28930	transcription start site region 28930	263 bp downstream
Tssr28931	transcription start site region 28931	89 bp upstream
Tssr28932	transcription start site region 28932	116 bp upstream
Tssr28933	transcription start site region 28933	148 bp upstream
Tssr28934	transcription start site region 28934	249 bp upstream
Tssr28935	transcription start site region 28935	282 bp upstream
Tssr28936	transcription start site region 28936	294 bp upstream