rs30260425 SNP Detail

Summary

• ID
  rs30260425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38938375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAA TTCGCGATGT TTTTAGAATC
  R
  GGGCTCTATT CTTCCTCAGT TTAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45410863	mCV25414901	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss134846113	ENSMUSSNP6475882	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss320724084	CHEV_3_38783148	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30260425					SNP	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38938375 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	756 bp proximal
Gm56780	predicted gene, 56780	1463 bp upstream
Gm65329	predicted gene, 65329	440 bp downstream
Rr575715	regulatory region 575715	909 bp distal
Rr575716	regulatory region 575716	1201 bp distal
Rr575717	regulatory region 575717	within coordinates
Rr575718	regulatory region 575718	247 bp proximal
Rr575719	regulatory region 575719	1310 bp proximal
Rr575720	regulatory region 575720	1876 bp proximal
Tssr28930	transcription start site region 28930	1086 bp upstream
Tssr28931	transcription start site region 28931	1457 bp upstream
Tssr28932	transcription start site region 28932	1484 bp upstream
Tssr28933	transcription start site region 28933	1516 bp upstream
Tssr28934	transcription start site region 28934	1617 bp upstream
Tssr28935	transcription start site region 28935	1650 bp upstream
Tssr28936	transcription start site region 28936	1662 bp upstream