rs30261234 SNP Detail

Summary

• ID
  rs30261234
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66362558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG AGGAGAGACC AGTCAGTGCC
  R
  CCCTTAAGCC TTTTCCTGGC ATCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47429714	NES11024588	PERLEGEN	MM_PANEL2	f	SNP		A	G		A	A	A	G
ss144494198	ENSMUSSNP6680452	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30261234					SNP	G	A	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47429714	NES11024588	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66362558 () rs orientation: forward

Symbol	Name	Function Class
Gm10558	predicted gene 10558	within coordinates
Map2	microtubule-associated protein 2	within coordinates
Rr412442	regulatory region 412442	1670 bp distal
Rr412443	regulatory region 412443	469 bp distal
Rr412444	regulatory region 412444	within coordinates
Tssr7142	transcription start site region 7142	1684 bp downstream
Tssr7143	transcription start site region 7143	1660 bp downstream
Tssr7144	transcription start site region 7144	1643 bp downstream
Tssr7145	transcription start site region 7145	1593 bp downstream
Tssr7146	transcription start site region 7146	1579 bp downstream
Tssr7147	transcription start site region 7147	1538 bp downstream
Tssr7148	transcription start site region 7148	1419 bp downstream
Tssr7149	transcription start site region 7149	1387 bp downstream
Tssr7150	transcription start site region 7150	1355 bp downstream
Tssr7151	transcription start site region 7151	1326 bp downstream
Tssr7152	transcription start site region 7152	1309 bp downstream
Tssr7153	transcription start site region 7153	1280 bp downstream
Tssr7154	transcription start site region 7154	548 bp upstream