rs30261345 SNP Detail

Summary

• ID
  rs30261345
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45226241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAT TGTAGTGAAG AGGCCACTGT
  R
  CGTACAGGCA GGAGACCCAA ACAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss39167004	mCV25250223	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					A		G
ss62358684	NES17228881	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	G	A	A		G	A	A	A
ss139365027	ENSMUSSNP4523631	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
ss324582453	CHEV_14_45608459	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30261345					SNP	A	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62358684	NES17228881	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45226241 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	within coordinates
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	within coordinates
Ptger2	prostaglandin E receptor 2 (subtype EP2)	within coordinates
Rr491040	regulatory region 491040	579 bp distal
Rr491041	regulatory region 491041	1060 bp proximal
Tssr4380	transcription start site region 4380	within coordinates
Tssr125199	transcription start site region 125199	606 bp downstream
Tssr125200	transcription start site region 125200	581 bp downstream
Tssr125201	transcription start site region 125201	312 bp downstream
Tssr125202	transcription start site region 125202	173 bp downstream
Tssr125203	transcription start site region 125203	112 bp downstream
Tssr125204	transcription start site region 125204	112 bp upstream
Tssr128221	transcription start site region 128221	889 bp downstream
Tssr128222	transcription start site region 128222	1066 bp downstream
Tssr128223	transcription start site region 128223	1118 bp downstream