rs30262308 SNP Detail

Summary

• ID
  rs30262308
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121504896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGCCAGAG AGAAGCACAA ACCTCTGGTG TCACTCTCAG
  TTCTGATGTG CCCGTTTATG TGATAAGGAC ACAGCTGCTT CGATCGTAGA GATGATCCCA
  M
  AAAACCAAAT ATGTTTTCTT CTAGATTCTA TTCTATTCCA TTCCATTCAA CAAACATCTG
  TGATGTGCCA GCCAGGAGTC TGGTGCTGGA GTTGTAAAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45429613	mCV23476275	ABI	CRAMUS_MOUSE	f	SNP	A	A	A				A		C
ss46929921	NES10690336	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		C	C	A	A		A	A		A
ss135727239	ENSMUSSNP1411955	ENSEMBL	ENSEMBL_Sanger	f	SNP			A						C
ss320905040	CHEV_3_121414165	CHEVERUD	SCREENING_POP	f	SNP												A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30262308					SNP	A	A	A	A	A	A	A	C	C	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46929921	NES10690336	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121504896 () rs orientation: forward

Symbol	Name	Function Class
Gm43607	predicted gene 43607	9 bp downstream
Gm43608	predicted gene 43608	1001 bp upstream
Rr584146	regulatory region 584146	1901 bp proximal