rs30263398 SNP Detail

Summary

• ID
  rs30263398
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9035002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCA CTTACAGATG CGTGGACCCA
  W
  TGTTATATTA GGGACCTAGA GGGAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45412424	mCV22695192	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss134570785	ENSMUSSNP1406387	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		T
ss320649339	CHEV_3_8969942	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30263398					SNP	T	A	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9035002 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr573351	regulatory region 573351			790 bp distal
Rr573352	regulatory region 573352			1253 bp distal
Rr573353	regulatory region 573353			1077 bp distal
Rr573354	regulatory region 573354			86 bp distal
Rr573355	regulatory region 573355			196 bp proximal
Rr573356	regulatory region 573356			1296 bp proximal
Tpd52	tumor protein D52			Intron
				Noncoding-Transcript-Variant