rs30263504 SNP Detail

Summary

• ID
  rs30263504
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48654331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA AGAAAGGATC GGGAGTGCTT
  Y
  CCATTTGTCT AATAGGTAAT TTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45910285	mCV23169303	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss133165811	ENSMUSSNP1278373	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss321794344	CHEV_6_48627396	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30263504					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48654331 () rs orientation: forward

Symbol	Name	Function Class
Gimap9	GTPase, IMAP family member 9	within coordinates
Gm46958	predicted gene, 46958	588 bp upstream
Rr629720	regulatory region 629720	1258 bp distal
Rr629721	regulatory region 629721	1975 bp proximal
Tssr56162	transcription start site region 56162	1242 bp downstream
Tssr56163	transcription start site region 56163	1207 bp downstream
Tssr56164	transcription start site region 56164	1188 bp downstream
Tssr56165	transcription start site region 56165	975 bp downstream
Tssr56166	transcription start site region 56166	276 bp upstream