rs30264742 SNP Detail

Summary

• ID
  rs30264742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86586280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT CCTGGGGCTC AAACCCAGGT
  Y
  GTCAGGTTCC ATGGCACAAG ACTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45909904	mCV23942313	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss133357953	ENSMUSSNP2547516	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss321846801	CHEV_6_86559292	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30264742					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86586280 () rs orientation: forward

Symbol	Name	Function Class
Gm67306	predicted gene, 67306	1596 bp upstream
Gm67317	predicted gene, 67317	within coordinates
Rr368114	regulatory region 368114	1491 bp downstream
Tssr1919	transcription start site region 1919	1512 bp downstream
Tssr57493	transcription start site region 57493	1452 bp downstream
Tssr57494	transcription start site region 57494	264 bp upstream
Tssr61819	transcription start site region 61819	1742 bp upstream
Tssr61820	transcription start site region 61820	1660 bp upstream
Tssr61821	transcription start site region 61821	1644 bp upstream
Tssr61822	transcription start site region 61822	1620 bp upstream
Tssr61823	transcription start site region 61823	1577 bp upstream
Tssr61824	transcription start site region 61824	17 bp downstream
Tssr61825	transcription start site region 61825	43 bp downstream